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  1. Extras
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  • Files and Directories
    • Understanding your file system
    • Logging onto the Cloud
    • Introducing the Shell
  • Using the Command Line
    • Navigating Files and Directories
    • Working with Files and Directories
    • Redirection
  • QC & RNA pre-processing
    • Introduction to Metatranscriptomics
    • Quality of Raw Reads
    • Ribosomal RNA Filtering
  • Taxonomic Annotation
    • Extracting a Community Profile
    • Visualising Community Structure
  • Functional Annotation
    • Extracting Functional Information
    • Normalising Abundances and Identifying Gene Families
  • Combining Annotations
    • Combining Taxonomic and Functional Annotations
    • Diversity Tackled With R
    • Taxonomic Analysis with R
  • Extras
    • Data
    • Glossary
    • Workflow Reference

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  • Workflow
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Workflow Reference

Here is a flowchart showing the workflow we will be following during this course. You may find it helpful to refer back to this diagram as you work through the course to remind yourself what you’re doing and why.

The pale blue blocks indicate which lesson each step falls under.

Workflow

Workflow diagram

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