NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Mean read length 4,189.3
Mean read quality 13.1
Median read length 3,564.0
Median read quality 13.4
Number of reads 316,251.0
Read length N50 5,974.0
STDEV read length 3,396.6
Total bases 1,324,863,094.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 316251 (100.0%) 1324.9Mb
>Q7 316250 (100.0%) 1324.9Mb
>Q10 287533 (90.9%) 1212.7Mb
>Q12 231872 (73.3%) 994.0Mb
>Q15 53321 (16.9%) 217.3Mb
Top 5 highest mean basecall quality scores and their read lengths
1 24.0 (391)
2 22.6 (848)
3 22.6 (225)
4 21.2 (298)
5 21.2 (252)
Top 5 longest reads and their mean basecall quality score
1 49893 (9.3)
2 48527 (12.0)
3 45895 (7.6)
4 45248 (13.9)
5 43421 (14.9)

Plots

Weighted histogram of read lengths

5k10k15k20k25k30k35k40k45k50k020M40M60M80M
Weighted histogram of read lengthsRead lengthNumber of bases

Weighted histogram of read lengths after log transformation

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Weighted histogram of read lengths after log transformationRead lengthNumber of bases

Non weighted histogram of read lengths

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Non weighted histogram of read lengthsRead lengthNumber of reads

Non weighted histogram of read lengths after log transformation

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Non weighted histogram of read lengths after log transformationRead lengthNumber of reads

Yield by length

05k10k15k20k25k30k35k00.20.40.60.811.21.4
Yield by lengthRead lengthCumulative yield for minimal length [Gb]

Read lengths vs Average read quality plot using dots

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Read lengths vs Average read quality plot using dotsRead lengthsAverage read quality

Read lengths vs Average read quality kde plot

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Read lengths vs Average read quality kde plotRead lengthsAverage read quality

Read lengths vs Average read quality plot using dots after log transformation of read lengths

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Read lengths vs Average read quality plot using dots after log transformation of read lengthsRead lengthsAverage read quality

Read lengths vs Average read quality kde plot

100100010000810121416182002004006000100200300400
Read lengths vs Average read quality kde plotRead lengthsAverage read quality